STRINGSTRING
Phatr11236 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11236" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11236Predicted protein (500 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
         
  0.615
ACL
Atp-citrate synthase (1082 aa)
         
  0.482
Phatr13944
Predicted protein (134 aa)
 
          0.464
Phatr17772
Predicted protein (1313 aa)
         
  0.433
PHATR_7646
Predicted protein (137 aa)
   
   
  0.424
Phatr10902
Predicted protein (473 aa)
         
  0.419
Phatrdraft1682
Anthranilate synthase (927 aa)
         
  0.414
Phatr17238
Anthranilate synthase (958 aa)
         
  0.414
Phatr47449
Predicted protein (236 aa)
         
  0.408
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
 
  0.406
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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