STRINGSTRING
Phatr11248 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11248" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11248Predicted protein (167 aa)    
Predicted Functional Partners:
Phatr50303
Predicted protein (124 aa)
       
      0.637
Phatr44603
Predicted protein (220 aa)
       
      0.631
Phatr47075
Predicted protein (473 aa)
       
      0.527
Phatr31465
Predicted protein (679 aa)
     
      0.518
Atp1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane (509 aa)
     
      0.518
Phatr50236
Predicted protein (264 aa)
       
      0.489
Phatrdraft559
Predicted protein (368 aa)
     
      0.469
Phatr7678
Predicted protein (134 aa)
     
      0.469
Phatr47250
Phosphatidate cytidylyltransferase (574 aa)
     
      0.469
Phatr5104
Predicted protein (251 aa)
     
   
  0.423
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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