Phatr11288 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr11288

Predicted protein (357 aa)

Predicted Functional Partners:

Phatr9987

0.646

Phatr26057

0.645

Phatr25204

0.526

Phatr42910

0.447

Phatr36081

0.447

Phatr23862

0.447

Phatr47067

0.430

Phatr37595

0.430

Phatr7664

0.412

Phatr52174

0.409

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr11288	Phatr23862	Predicted protein	Predicted protein	0.447
Phatr11288	Phatr25204	Predicted protein	Predicted protein	0.526
Phatr11288	Phatr26057	Predicted protein	Predicted protein	0.645
Phatr11288	Phatr36081	Predicted protein	Predicted protein	0.447
Phatr11288	Phatr37595	Predicted protein	Predicted protein	0.430
Phatr11288	Phatr42910	Predicted protein	Predicted protein	0.447
Phatr11288	Phatr47067	Predicted protein	Predicted protein	0.430
Phatr11288	Phatr52174	Predicted protein	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks	0.409
Phatr11288	Phatr7664	Predicted protein	Predicted protein	0.412
Phatr11288	Phatr9987	Predicted protein	Predicted protein	0.646
Phatr23862	Phatr11288	Predicted protein	Predicted protein	0.447
Phatr23862	Phatr47067	Predicted protein	Predicted protein	0.457
Phatr23862	Phatr52174	Predicted protein	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks	0.481
Phatr25204	Phatr11288	Predicted protein	Predicted protein	0.526
Phatr25204	Phatr47067	Predicted protein	Predicted protein	0.999
Phatr25204	Phatr52174	Predicted protein	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks	0.619
Phatr25204	Phatr7664	Predicted protein	Predicted protein	0.672
Phatr26057	Phatr11288	Predicted protein	Predicted protein	0.645
Phatr26057	Phatr47067	Predicted protein	Predicted protein	0.524
Phatr26057	Phatr52174	Predicted protein	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks	0.669

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2017

Credits

Access

Info

About