STRINGSTRING
Phatr11288 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11288" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11288Predicted protein (357 aa)    
Predicted Functional Partners:
Phatr9987
Predicted protein (350 aa)
   
 
  0.646
Phatr26057
Predicted protein (386 aa)
   
 
  0.645
Phatr25204
Predicted protein (598 aa)
              0.526
Phatr42910
Predicted protein (491 aa)
   
   
  0.447
Phatr36081
Predicted protein (358 aa)
   
   
  0.447
Phatr23862
Predicted protein (283 aa)
   
   
  0.447
Phatr47067
Predicted protein (1237 aa)
         
  0.430
Phatr37595
Predicted protein (186 aa)
       
 
  0.430
Phatr7664
Predicted protein (145 aa)
   
      0.412
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
 
  0.409
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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