STRINGSTRING
Phatr11633 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11633" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11633Predicted protein (312 aa)    
Predicted Functional Partners:
ACC2
Biotin carboxylase (2282 aa)
   
  0.947
ACC1
Acetyl-coa carboxylase (2092 aa)
     
  0.857
hDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (205 aa)
       
 
  0.750
sDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (163 aa)
       
 
  0.750
hDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (209 aa)
       
 
  0.750
sDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (187 aa)
       
 
  0.750
Phatr9890
Predicted protein (282 aa)
   
  0.740
Phatr9157
Predicted protein (299 aa)
   
  0.740
Phatr50148
Predicted protein (377 aa)
   
  0.740
Phatr48490
Predicted protein (409 aa)
   
  0.740
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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