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Phatr11652 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11652" - Translation initiation factor IF-3 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11652Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (186 aa)    
Predicted Functional Partners:
Phatr30486
Predicted protein; Belongs to the universal ribosomal protein uS13 family (146 aa)
     
 
  0.775
Phatr50886
Predicted protein (145 aa)
     
 
  0.775
Phatr9894
Predicted protein (140 aa)
   
 
  0.774
Phatr51291
Predicted protein (121 aa)
     
 
  0.766
Phatr13682
Predicted protein (220 aa)
   
 
  0.748
Phatr23691
Predicted protein; Belongs to the universal ribosomal protein uS8 family (130 aa)
     
 
  0.746
Phatr50701
Predicted protein; Belongs to the universal ribosomal protein uS12 family (143 aa)
     
 
  0.741
rps19
Predicted protein; Belongs to the universal ribosomal protein uS19 family (147 aa)
     
 
  0.741
Phatr33660
Predicted protein (253 aa)
     
 
  0.727
Phatr29097
Predicted protein; Belongs to the universal ribosomal protein uS7 family (225 aa)
     
 
  0.716
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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