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Phatr11652 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11652" - Translation initiation factor IF-3 in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11652Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (186 aa)    
Predicted Functional Partners:
Phatr50886
Predicted protein (145 aa)
     
  0.969
Phatr30486
Predicted protein (146 aa)
     
 
  0.958
rps19
Predicted protein (147 aa)
   
 
  0.951
Phatr10835
Translation initiation factor IF-2 (579 aa)
   
  0.902
Phatr16603
Predicted protein (599 aa)
   
  0.900
Phatr51291
Predicted protein (121 aa)
   
  0.843
Phatr9894
Predicted protein (140 aa)
   
  0.840
Phatr17519
Predicted protein (143 aa)
   
  0.840
Phatr13682
Predicted protein; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (220 aa)
   
  0.839
Phatr19103
Predicted protein (102 aa)
   
  0.819
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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