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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr11653 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11653" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11653Predicted protein (174 aa)    
Predicted Functional Partners:
Phatr44242
Predicted protein (890 aa)
     
 
  0.996
Phatr46837
Predicted protein (997 aa)
     
 
  0.995
Phatr19552
Predicted protein (529 aa)
   
 
  0.994
Phatr36743
Predicted protein (149 aa)
   
 
  0.990
Phatr48920
Predicted protein (317 aa)
     
 
  0.987
Phatr45871
Predicted protein (944 aa)
     
 
  0.987
Phatr25666
Predicted protein (885 aa)
     
 
  0.985
Phatr18579
Predicted protein (510 aa)
   
 
  0.983
Phatr45441
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
   
 
  0.982
Phatr26035
Predicted protein (266 aa)
     
 
  0.981
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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