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Phatr11653 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11653" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11653Predicted protein (174 aa)    
Predicted Functional Partners:
Phatr42495
Predicted protein (1233 aa)
     
  0.983
Phatr17974
Predicted protein (475 aa)
     
  0.980
Phatr36743
Predicted protein (149 aa)
     
  0.977
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
  0.976
Phatr15757
Predicted protein (181 aa)
     
  0.972
Phatr21557
Predicted protein (348 aa)
     
   
  0.970
Phatr9199
Predicted protein (151 aa)
     
  0.965
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
   
  0.959
Phatr12144
Predicted protein (220 aa)
   
   
  0.958
Phatr13820
Predicted protein (282 aa)
     
  0.957
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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