STRINGSTRING
Phatr11934 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11934" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11934Predicted protein (74 aa)    
Predicted Functional Partners:
Phatr30486
Predicted protein (146 aa)
   
  0.983
Phatr29097
Predicted protein (225 aa)
   
  0.972
Phatr50886
Predicted protein (145 aa)
   
  0.964
Phatr50701
Predicted protein (143 aa)
   
  0.962
rps19
Predicted protein (147 aa)
   
  0.959
Phatr51291
Predicted protein (121 aa)
   
  0.955
Phatr28147
Predicted protein (62 aa)
   
  0.950
Phatr9554
Predicted protein (78 aa)
   
  0.946
Phatr28562
Predicted protein (166 aa)
   
  0.946
Phatr13682
Predicted protein; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (220 aa)
   
  0.942
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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