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STRINGSTRING
Phatr11954 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11954" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11954Predicted protein (149 aa)    
Predicted Functional Partners:
Phatr9020
Predicted protein (364 aa)
       
 
  0.987
Phatr48846
Predicted protein; Belongs to the NARF family (627 aa)
     
 
  0.911
Phatr47020
Anamorsin homolog; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell (306 aa)
     
   
  0.861
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.655
Phatr7755
Predicted protein (88 aa)
     
 
  0.628
Phatr43649
Predicted protein (775 aa)
     
 
  0.628
Phatr16120
Predicted protein (217 aa)
           
  0.581
Phatr38642
Predicted protein (587 aa)
           
  0.534
Phatr4593
Predicted protein (182 aa)
     
 
  0.486
Phatr19821
Cytosolic Fe-S cluster assembly factor NUBP1 homolog; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily (368 aa)
     
 
  0.486
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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