STRINGSTRING
Phatr11990 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr11990" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr11990Predicted protein (330 aa)    
Predicted Functional Partners:
Phatr21030
Predicted protein (390 aa)
 
   
      0.725
Phatr41645
Predicted protein (166 aa)
     
  0.714
Phatr15641
Predicted protein (349 aa)
   
 
  0.676
METH
Methionine synthase (1245 aa)
         
  0.667
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
 
 
  0.657
Phatr36955
Predicted protein (132 aa)
     
 
  0.623
Phatr11462
Predicted protein (130 aa)
     
 
  0.623
Phatr47293
Predicted protein (580 aa)
         
  0.622
Phatr12107
Predicted protein (460 aa)
       
  0.569
Phatr48985
Predicted protein (2198 aa)
     
 
  0.556
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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