STRINGSTRING
Phatr12107 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12107" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12107Predicted protein (460 aa)    
Predicted Functional Partners:
Phatr48414
Predicted protein (593 aa)
 
 
  0.989
Phatr47685
Predicted protein (598 aa)
 
 
  0.940
Phatr1690
Predicted protein (495 aa)
       
  0.887
Phatrdraft1682
Anthranilate synthase (927 aa)
 
 
  0.878
Phatrdraft1517
Predicted protein (129 aa)
       
  0.872
Phatr50806
Predicted protein (588 aa)
       
  0.872
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
       
  0.872
Phatr41496
Predicted protein (137 aa)
       
  0.872
Phatr32849
Predicted protein (299 aa)
       
  0.872
Phatr28585
Branched-chain-amino-acid aminotransferase (326 aa)
       
  0.872
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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