STRINGSTRING
Phatr12172 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12172" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12172Predicted protein (153 aa)    
Predicted Functional Partners:
Phatr12894
Predicted protein (403 aa)
   
  0.975
Phatr38165
Predicted protein (232 aa)
     
  0.952
RFK
Riboflavin kinase (150 aa)
         
    0.800
Phatr1690
Predicted protein (495 aa)
         
  0.607
Phatr47067
Predicted protein (1237 aa)
         
  0.603
Phatr42826
Predicted protein (1192 aa)
   
   
  0.546
Phatr7173
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (143 aa)
   
 
  0.528
Phatr6454
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (194 aa)
       
  0.515
Phatr46220
Predicted protein (356 aa)
     
      0.509
Phatr42619
Predicted protein (494 aa)
       
  0.507
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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