STRINGSTRING
Phatr12269 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12269" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12269Predicted protein (300 aa)    
Predicted Functional Partners:
Phatr31683
Predicted protein (426 aa)
   
 
  0.912
Phatr19000
Farnesyltranstransferase (337 aa)
   
 
  0.741
Phatr16615
Predicted protein (325 aa)
   
 
  0.741
Phatr15180
Predicted protein (309 aa)
   
 
  0.741
Phatr47199
Predicted protein (323 aa)
 
 
 
  0.731
Phatr49325
Predicted protein (343 aa)
   
 
  0.712
Phatr47271
Predicted protein (330 aa)
   
 
  0.690
Phatr16283
Predicted protein (249 aa)
   
 
 
  0.634
Phatr47067
Predicted protein (1237 aa)
         
  0.631
Phatr20833
Predicted protein (211 aa)
     
 
  0.622
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (12%) [HD]