STRINGSTRING
Phatr12339 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12339" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12339Predicted protein (275 aa)    
Predicted Functional Partners:
Phatr10954
Predicted protein (209 aa)
     
 
  0.988
Phatr43664
Predicted protein (655 aa)
     
 
  0.984
Pt-MAD2
Mitotic checkpoint protein with homology with MAD2 (215 aa)
     
 
  0.984
Pt-KIF3
Kinesin family-like protein (953 aa)
     
 
  0.971
Pt-BUB3
WD40 mitotic checkpoint-like protein similar to spleen mitotic checkpoint BUB3 (397 aa)
     
 
  0.968
Phatr50489
Predicted protein (387 aa)
     
 
  0.964
Phatr48922
Predicted protein (965 aa)
     
        0.958
Aurora-A
Predicted protein (327 aa)
   
 
0.956
Pt-MAD1
Mitotic spindle assembly checkpoint protein (1315 aa)
     
 
  0.898
Phatr48451
Separase protein (2039 aa)
     
 
  0.879
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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