STRINGSTRING
Phatr12394 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12394" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12394Predicted protein (260 aa)    
Predicted Functional Partners:
Phatr43105
Predicted protein (455 aa)
     
 
  0.998
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.998
Phatr45356
Predicted protein (479 aa)
     
 
  0.998
Phatr33660
Predicted protein (253 aa)
     
  0.997
Phatr18559
40S ribosomal protein S6 (245 aa)
     
  0.997
Phatr17545
Predicted protein (261 aa)
     
  0.997
Phatr17324
Predicted protein (261 aa)
     
  0.997
Phatr7346
Predicted protein (134 aa)
     
  0.997
Phatr19647
Predicted protein (354 aa)
     
 
  0.996
rps19
Predicted protein (147 aa)
     
  0.996
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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