Phatr12411 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr12411

Predicted protein (125 aa)

Predicted Functional Partners:

Phatr16814

0.919

Phatr21557

0.908

Phatr2182

0.897

Phatr26035

0.870

Phatr32036

0.850

Phatr36743

0.841

Phatr8777

0.834

Phatr45356

0.834

Phatr47058

0.825

Phatr12679

0.823

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr12411	Phatr12679	Predicted protein	Predicted protein	0.823
Phatr12411	Phatr16814	Predicted protein	Predicted protein	0.919
Phatr12411	Phatr21557	Predicted protein	Predicted protein	0.908
Phatr12411	Phatr2182	Predicted protein	Predicted protein	0.897
Phatr12411	Phatr26035	Predicted protein	Predicted protein	0.870
Phatr12411	Phatr32036	Predicted protein	Predicted protein	0.850
Phatr12411	Phatr36743	Predicted protein	Predicted protein	0.841
Phatr12411	Phatr45356	Predicted protein	Predicted protein	0.834
Phatr12411	Phatr47058	Predicted protein	Predicted protein	0.825
Phatr12411	Phatr8777	Predicted protein	Predicted protein	0.834
Phatr12679	Phatr12411	Predicted protein	Predicted protein	0.823
Phatr12679	Phatr16814	Predicted protein	Predicted protein	0.993
Phatr12679	Phatr21557	Predicted protein	Predicted protein	0.990
Phatr12679	Phatr2182	Predicted protein	Predicted protein	0.985
Phatr12679	Phatr26035	Predicted protein	Predicted protein	0.922
Phatr12679	Phatr32036	Predicted protein	Predicted protein	0.930
Phatr12679	Phatr36743	Predicted protein	Predicted protein	0.786
Phatr12679	Phatr45356	Predicted protein	Predicted protein	0.998
Phatr12679	Phatr47058	Predicted protein	Predicted protein	0.993
Phatr12679	Phatr8777	Predicted protein	Predicted protein	0.986

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About