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Phatr12416 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12416" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12416Predicted protein (551 aa)    
Predicted Functional Partners:
Phatr45621
Predicted protein (426 aa)
   
   
  0.558
Phatr31367
Predicted protein (819 aa)
       
  0.549
Phatr19901
Predicted protein (900 aa)
           
  0.463
ACL
Atp-citrate synthase (1082 aa)
           
  0.426
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
         
  0.421
Phatr24739
Predicted protein (1594 aa)
         
  0.421
Phatr49253
Predicted protein (566 aa)
       
  0.418
Phatr49591
Predicted protein (202 aa)
       
  0.410
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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