STRINGSTRING
Phatr12516 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12516" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12516Predicted protein (147 aa)    
Predicted Functional Partners:
Phatrdraft1638
Predicted protein (548 aa)
       
 
  0.971
Phatr13192
Predicted protein (74 aa)
     
 
  0.967
Phatr12309
Predicted protein (134 aa)
       
      0.944
Phatr54743
Predicted protein (347 aa)
       
      0.870
Phatr20335
Predicted protein (665 aa)
       
 
  0.648
Phatr19937
Predicted protein (1012 aa)
       
 
  0.648
Phatr46292
Predicted protein (772 aa)
     
      0.630
Phatr7959
Predicted protein (98 aa)
       
      0.598
Phatr6839
Predicted protein (101 aa)
       
      0.598
Phatr6817
Predicted protein (106 aa)
       
      0.598
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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