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STRINGSTRING
Phatr12533 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12533" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12533Predicted protein (222 aa)    
Predicted Functional Partners:
MPDC
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes (415 aa)
   
 
  0.984
Phatr49325
Predicted protein; Belongs to the FPP/GGPP synthase family (343 aa)
   
 
  0.981
Phatr47271
Predicted protein; Belongs to the FPP/GGPP synthase family (330 aa)
   
 
  0.970
HDR
Hydroxymethylbutenyl diphosphate reductase; Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
         
  0.965
Phatr19000
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family (337 aa)
   
 
  0.923
Phatr54983
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
     
   
  0.912
Phatr16870
3-hydroxy-3-methylglutaryl coenzyme A reductase (367 aa)
   
   
  0.898
Phatr16649
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase (461 aa)
   
   
  0.874
MK
Mevalonate kinase (490 aa)
   
   
  0.826
Phatr12972
Predicted protein (247 aa)
   
   
 
0.805
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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