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STRINGSTRING
sDer1-2 protein (Phaeodactylum tricornutum) - STRING interaction network
"sDer1-2" - Derlin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sDer1-2Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (187 aa)    
Predicted Functional Partners:
sUfd1
Predicted protein (191 aa)
     
 
  0.785
sCdc48
Predicted protein (797 aa)
     
 
  0.719
hNpl4
Predicted protein (473 aa)
     
 
  0.681
Phatr44360
Predicted protein (416 aa)
     
 
  0.678
Sec61alpha
Transport protein Sec61 alpha subunit; Belongs to the SecY/SEC61-alpha family (472 aa)
     
 
  0.640
hHrd1
Predicted protein (632 aa)
     
 
  0.592
Phatr47933
Predicted protein (848 aa)
     
 
  0.592
Phatr11633
Predicted protein (312 aa)
       
 
  0.562
Phatr48662
Predicted protein (998 aa)
     
 
  0.561
Phatr32877
Predicted protein (290 aa)
     
 
  0.561
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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