• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr12578 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12578" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12578Predicted protein (68 aa)    
Predicted Functional Partners:
Phatr27762
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (160 aa)
     
  0.971
Phatr40111
Predicted protein (308 aa)
     
 
  0.857
SAE2
Sumo-activating enzyme 2 (643 aa)
     
 
  0.848
Phatr44818
Predicted protein (762 aa)
     
 
  0.846
Phatr42712
Predicted protein (219 aa)
     
 
  0.838
Phatr42735
Predicted protein (796 aa)
       
 
  0.837
Phatr49765
Predicted protein (1283 aa)
     
 
  0.816
SUMO
Small ubiquitin-like modifier (103 aa)
         
 
0.800
Phatr54869
Predicted protein (445 aa)
     
 
  0.715
Phatr26750
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (153 aa)
     
 
  0.690
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (7%) [HD]