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SOD1 protein (Phaeodactylum tricornutum) - STRING interaction network
"SOD1" - Superoxide dismutase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOD1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (216 aa)    
Predicted Functional Partners:
Phatr15852
Predicted protein (138 aa)
     
  0.954
SOD2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (226 aa)
   
   
 
0.812
Phatr22418
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (566 aa)
       
  0.809
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.754
Phatr48636
Glutathione peroxidase (177 aa)
       
  0.743
Phatr13005
Glutathione peroxidase (157 aa)
       
  0.743
APX1
Ascorbate peroxidase (261 aa)
       
  0.725
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.693
Phatr9411
30S ribosomal protein S15 (78 aa)
   
 
  0.688
Phatr7893
30S ribosomal protein S15 (85 aa)
   
 
  0.688
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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