STRINGSTRING
Phatr12589 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12589" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12589Predicted protein (213 aa)    
Predicted Functional Partners:
Phatr41265
Predicted protein (304 aa)
         
    0.900
Phatr8876
Predicted protein (167 aa)
   
   
    0.895
Phatr48302
Predicted protein (549 aa)
       
  0.695
Phatr47067
Predicted protein (1237 aa)
         
  0.670
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.653
Phatr10089
Predicted protein (141 aa)
     
 
  0.560
Phatr10005
Predicted protein (212 aa)
   
 
  0.529
Phatr43748
Predicted protein (232 aa)
       
  0.509
ACL
Atp-citrate synthase (1082 aa)
         
  0.475
Phatr12107
Predicted protein (460 aa)
         
  0.468
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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