STRINGSTRING
Phatr12713 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12713" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12713Predicted protein (153 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
       
  0.767
Phatr14785
Predicted protein (176 aa)
 
 
  0.760
Phatr50084
Predicted protein (260 aa)
 
 
  0.753
Trx-f
Thioredoxin f (107 aa)
   
 
  0.547
Trx-h2
Thioredoxin h (109 aa)
   
 
  0.547
Phatr14885
Predicted protein (100 aa)
   
 
  0.547
Phatr12104
Predicted protein (106 aa)
   
 
  0.547
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.536
Phatr24739
Predicted protein (1594 aa)
   
   
  0.536
Phatr10847
Predicted protein (284 aa)
   
      0.535
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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