STRINGSTRING
Phatr12878 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12878" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12878Predicted protein (312 aa)    
Predicted Functional Partners:
Phatr51830
Methylmalonyl-coa mutase (719 aa)
 
 
  0.946
ACC2
Biotin carboxylase (2282 aa)
       
  0.793
Phatr54787
UDP-glucose-glycoprotein glucosyltransferase (166 aa)
 
            0.722
GLXI
Lactyolglutathione lyase (310 aa)
       
  0.702
ACC1
Acetyl-coa carboxylase (2092 aa)
       
  0.667
FAO1
Peroxisomal bifunctional enzyme (767 aa)
     
  0.652
Phatr35240
Predicted protein (684 aa)
     
  0.652
Phatrdraft976
Predicted protein (321 aa)
       
  0.634
Phatr45886
Predicted protein (581 aa)
       
  0.634
Phatr19329
Predicted protein (597 aa)
       
  0.634
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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