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Phatr12888 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12888" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12888Predicted protein (202 aa)    
Predicted Functional Partners:
Phatr19324
Predicted protein (554 aa)
 
 
  0.998
Phatr38891
Predicted protein (373 aa)
 
  0.992
PHATR_3140
Predicted protein (196 aa)
 
 
  0.958
Phatr9654
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (347 aa)
 
 
  0.929
Phatr10025
Predicted protein (295 aa)
 
   
  0.857
Phatr47067
Predicted protein (1237 aa)
   
   
  0.813
Phatr27735
Predicted protein (538 aa)
   
   
  0.754
Phatr50453
Predicted protein (279 aa)
   
   
  0.743
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.661
Phatr10902
Predicted protein (473 aa)
         
  0.652
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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