STRINGSTRING
Phatr12898 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12898" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12898Predicted protein (172 aa)    
Predicted Functional Partners:
Phatr28285
Predicted protein (553 aa)
     
 
  0.780
helicase_7
Predicted protein (422 aa)
       
 
  0.740
Phatr41756
Predicted protein (651 aa)
       
 
  0.740
Phatr23865
Predicted protein (720 aa)
       
 
  0.733
Phatr47271
Predicted protein (330 aa)
 
 
        0.708
MER3
Mer3 meiotic cross-over helicase (154 aa)
       
 
  0.680
Phatr25
Predicted protein (1589 aa)
       
 
  0.680
Phatr44863
Predicted protein (956 aa)
     
 
  0.659
Phatr20608
Predicted protein (830 aa)
     
 
  0.659
Phatr54743
Predicted protein (347 aa)
     
 
  0.608
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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