STRINGSTRING
Phatr12902 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12902" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12902Predicted protein (536 aa)    
Predicted Functional Partners:
Phatr19901
Predicted protein (900 aa)
   
 
  0.995
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
 
  0.975
Phatr26029
Predicted protein (478 aa)
   
 
  0.959
Phatr51092
Glutamine synthetase (416 aa)
         
  0.950
Phatr2171
Predicted protein (439 aa)
   
 
  0.944
Phatr9283
Predicted protein (623 aa)
   
  0.938
Phatr45758
Nadph-cytochrome P450 reductase (753 aa)
   
  0.938
Phatr42018
Ferredoxin--NADP reductase (320 aa)
   
  0.938
Phatr23717
Ferredoxin--NADP reductase (340 aa)
   
  0.938
Phatr15777
Ferredoxin--NADP reductase (299 aa)
   
  0.938
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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