STRINGSTRING
Phatr12969 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12969" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12969Predicted protein (244 aa)    
Predicted Functional Partners:
Phatr52603
Predicted protein (597 aa)
     
  0.654
Phatr47293
Predicted protein (580 aa)
       
    0.653
Phatr49601
Alanine glyoxylate aminotransferase (465 aa)
   
 
  0.615
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
 
    0.595
Phatr24739
Predicted protein (1594 aa)
     
 
    0.595
Phatr28222
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (316 aa)
       
  0.534
TAL
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (348 aa)
       
  0.534
METH
Methionine synthase (1245 aa)
              0.526
Phatr48819
Predicted protein (681 aa)
     
  0.503
PGM_2
Phosphoglucomutase (528 aa)
     
  0.503
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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