STRINGSTRING
Phatr12985 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12985" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12985Predicted protein (132 aa)    
Predicted Functional Partners:
Phatr10617
Predicted protein (229 aa)
   
  0.969
Phatr37018
Predicted protein (154 aa)
     
    0.963
Phatr14713
Predicted protein (137 aa)
   
  0.962
rpl2
Predicted protein (257 aa)
   
  0.898
Phatr12238
Predicted protein (184 aa)
   
  0.873
Phatr25375
Predicted protein (201 aa)
   
  0.843
Phatr13361
Predicted protein (389 aa)
   
  0.833
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
  0.804
Phatr7358
Predicted protein (137 aa)
   
  0.804
Phatr28979
Predicted protein (164 aa)
   
  0.799
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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