STRINGSTRING
Phatr12989 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr12989" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12989Predicted protein (363 aa)    
Predicted Functional Partners:
Phatr19324
Predicted protein (554 aa)
   
   
  0.679
Phatr51869
Myo-inositol 2-dehydrogenase (301 aa)
   
 
  0.608
Phatr48762
Predicted protein (416 aa)
   
 
  0.608
PHATR_3639
Myo-inositol 2-dehydrogenase putative (347 aa)
   
 
  0.608
Phatr35638
Predicted protein (410 aa)
   
 
  0.608
Phatr25422
Predicted protein (374 aa)
   
 
  0.608
GMD1
Gdp-mannose 4,6-dehydratase (363 aa)
       
  0.593
Phatr50500
Predicted protein (358 aa)
   
 
  0.591
Phatr48864
Reductase with NAD or NADP as acceptor (395 aa)
   
 
  0.591
Phatr45434
Nad-dependent epimerase/dehydratase (364 aa)
   
 
  0.591
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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