STRINGSTRING
Phatr13005 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13005" - Glutathione peroxidase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13005Glutathione peroxidase (157 aa)    
Predicted Functional Partners:
gshB
Glutathione synthase. glutathione synthetase. GSH synthetase (567 aa)
         
  0.939
Phatr46880
Predicted protein (576 aa)
     
 
  0.914
Phatr44775
Predicted protein (580 aa)
     
 
  0.911
Phatr19513
Predicted protein (717 aa)
     
 
  0.911
Phatr34976
Predicted protein (248 aa)
         
  0.901
Phatr15214
Predicted protein (111 aa)
         
    0.900
Phatr48636
Glutathione peroxidase (177 aa)
   
   
 
0.818
Gsr_2
Glutathione reductase (496 aa)
   
 
  0.785
Trx-f
Thioredoxin f (107 aa)
   
  0.775
Trx-h2
Thioredoxin h (109 aa)
   
  0.775
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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