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STRINGSTRING
Phatr13093 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13093" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13093Predicted protein (495 aa)    
Predicted Functional Partners:
Phatr11409
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (160 aa)
     
 
  0.802
Phatr18239
Predicted protein (1058 aa)
     
 
  0.764
Phatr43759
Predicted protein (462 aa)
     
 
  0.756
Phatr47879
Predicted protein (1958 aa)
     
 
  0.701
Phatr16875
Predicted protein (164 aa)
     
 
  0.684
Phatr38931
Predicted protein (1031 aa)
     
 
  0.621
Phatr43517
Predicted protein (1255 aa)
     
 
  0.589
hBRM
Predicted protein (995 aa)
   
 
0.570
H2A-m1
Histone H2A (138 aa)
     
 
  0.559
Phatr42758
Predicted protein (1346 aa)
     
 
  0.540
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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