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Phatr13125 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13125" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13125Predicted protein (308 aa)    
Predicted Functional Partners:
Phatr12329
Predicted protein (207 aa)
 
          0.673
Phatr39627
Predicted protein (410 aa)
 
          0.583
Phatr47617
Predicted protein (372 aa)
   
   
  0.562
Phatr45676
Predicted protein (308 aa)
 
          0.502
Phatr31234
Predicted protein (174 aa)
 
          0.472
Phatr41130
Predicted protein (304 aa)
 
          0.462
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.443
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
         
  0.443
Phatr47585
Predicted protein (271 aa)
   
          0.440
HemE_1
Uroporphyrinogen decarboxylase (431 aa)
       
  0.434
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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