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STRINGSTRING
Phatr13157 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13157" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13157Predicted protein; Belongs to the small GTPase superfamily. Arf family (177 aa)    
Predicted Functional Partners:
Rab6
Predicted protein (236 aa)
     
 
  0.843
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
     
 
  0.791
Phatr45316
Predicted protein (1451 aa)
       
 
  0.779
Phatr44037
Predicted protein (1291 aa)
       
 
  0.729
Phatr46588
Predicted protein (1225 aa)
     
 
  0.716
Phatr43038
Predicted protein (1112 aa)
     
 
  0.714
Rab7
Predicted protein (237 aa)
     
 
  0.695
Phatr40171
Predicted protein (364 aa)
     
 
  0.695
Phatr31068
Predicted protein (353 aa)
     
 
  0.688
Sec4
Predicted protein (207 aa)
   
 
  0.551
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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