STRINGSTRING
Phatr13160 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13160" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13160Predicted protein (314 aa)    
Predicted Functional Partners:
Phatr49325
Predicted protein (343 aa)
   
  0.942
Phatr47271
Predicted protein (330 aa)
   
  0.936
Phatr19000
Farnesyltranstransferase (337 aa)
   
  0.927
Phatr48864
Reductase with NAD or NADP as acceptor (395 aa)
     
 
  0.917
Phatr31339
Predicted protein (482 aa)
 
 
  0.871
Phatr16932
Predicted protein (361 aa)
         
  0.861
PHATR_645
Acetyl-coenzyme A synthetase (678 aa)
 
   
  0.846
Phatr10852
Predicted protein (167 aa)
   
 
  0.837
Phatr14208
Predicted protein (249 aa)
   
 
  0.814
Phatr45841
Predicted protein (331 aa)
         
  0.802
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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