STRINGSTRING
Phatr13175 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13175" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13175Predicted protein (391 aa)    
Predicted Functional Partners:
AAT_2
Aspartate aminotransferase (426 aa)
       
  0.913
AAT_1
Aspartate transaminase (435 aa)
       
  0.913
Phatr51609
Predicted protein (529 aa)
     
 
  0.908
Phatrdraft870
Predicted protein (457 aa)
         
  0.903
Phatr38891
Predicted protein (373 aa)
         
  0.900
TYR1
Tyrosinase (546 aa)
         
    0.800
Phatr14356
Predicted protein (64 aa)
   
  0.729
Phatr27851
Annotation not available (139 aa)
       
      0.629
Phatr21181
Predicted protein (323 aa)
       
  0.576
Phatr45621
Predicted protein (426 aa)
       
  0.570
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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