STRINGSTRING
Phatr13221 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13221" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13221Predicted protein (208 aa)    
Predicted Functional Partners:
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
  0.984
Phatr54612
Ercc4-like protein (736 aa)
     
  0.944
Phatr19604
Predicted protein (363 aa)
       
 
  0.902
Rad22
Predicted protein (468 aa)
       
  0.849
Phatr47619
Predicted protein (1565 aa)
       
  0.749
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
     
  0.735
Phatr46971
Predicted protein (696 aa)
     
  0.735
POLA
DNA polymerase (1147 aa)
       
  0.711
Phatr52678
DNA polymerase (2155 aa)
       
  0.705
Phatr53969
Predicted protein (1423 aa)
       
 
  0.703
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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