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Phatr13235 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13235" - Glycine decarboxylase T-protein, aminomethyl transferase, GDCT, GCST, GCVT in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13235Glycine decarboxylase T-protein, aminomethyl transferase, GDCT, GCST, GCVT (512 aa)    
Predicted Functional Partners:
Phatr23164
Predicted protein (489 aa)
   
  0.855
Phatr33540
Predicted protein (155 aa)
     
  0.766
Phatr20716
Predicted protein (138 aa)
     
  0.747
Phatr47058
Predicted protein (606 aa)
     
      0.739
Phatr44863
Predicted protein (956 aa)
   
 
  0.720
Phatr20608
Predicted protein (830 aa)
   
 
  0.720
Phatr44298
Predicted protein (1736 aa)
     
  0.677
Phatr47992
Predicted protein (432 aa)
       
  0.671
Phatr11785
Predicted protein (631 aa)
     
  0.663
Phatr25549
Predicted protein (512 aa)
   
 
0.658
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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