STRINGSTRING
Phatr13237 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13237" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13237Predicted protein (241 aa)    
Predicted Functional Partners:
Phatr43680
Predicted protein (1458 aa)
       
 
  0.966
Phatr46213
Predicted protein (714 aa)
       
 
  0.712
Phatr37212
Predicted protein (321 aa)
       
 
  0.712
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
     
      0.681
Phatr43830
Vacuolar protein sorting-associated protein 35 (1712 aa)
       
      0.547
Phatr18599
Predicted protein (142 aa)
     
      0.517
RPN5
Regulatory proteasome non-atpase subunit 5 (457 aa)
       
      0.461
CATR1
Caltractin (151 aa)
       
 
  0.432
CATR2
Caltractin (192 aa)
       
 
  0.432
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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