STRINGSTRING
Phatr13253 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13253" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13253Predicted protein (83 aa)    
Predicted Functional Partners:
Phatr9078
Predicted protein (105 aa)
   
          0.519
Phatr43619
Predicted protein (241 aa)
   
          0.510
PsbO
Oxygen-evolving enhancer protein 1 (308 aa)
   
          0.501
Phatr48359
Predicted protein (218 aa)
   
          0.495
Phatr26293
Photosystem II 12 kDa extrinsic protein, chloroplastic (148 aa)
   
          0.492
Phatr11235
Predicted protein (109 aa)
   
          0.489
Phatr15371
Predicted protein (141 aa)
   
          0.486
Phatr49182
Predicted protein (312 aa)
   
          0.482
Phatr7784
Predicted protein (79 aa)
   
          0.478
Phatr33543
Predicted protein (259 aa)
   
          0.468
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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