STRINGSTRING
Phatr13254 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13254" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13254Predicted protein (115 aa)    
Predicted Functional Partners:
Phatr8363
Predicted protein (84 aa)
       
  0.638
Phatr22027
Predicted protein (92 aa)
       
  0.637
Phatr34800
Predicted protein (387 aa)
       
      0.547
Phatr15417
Predicted protein (83 aa)
         
  0.531
Phatr20948
Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (104 aa)
       
 
  0.476
Phatr45572
Predicted protein (398 aa)
       
 
  0.473
Phatr4593
Predicted protein (182 aa)
           
  0.426
Phatr19821
Predicted protein; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins (368 aa)
           
  0.426
Phatr16719
Predicted protein (182 aa)
           
  0.426
PHATR_1494
Predicted protein (438 aa)
           
  0.426
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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