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Phatr13281 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13281" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13281Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)    
Predicted Functional Partners:
Phatr14145
Predicted protein (516 aa)
     
 
  0.998
Phatr8777
Predicted protein (110 aa)
     
 
  0.990
Phatr45356
Predicted protein (479 aa)
     
 
  0.989
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.989
Phatr47176
Predicted protein (435 aa)
   
 
  0.989
Phatr25394
Predicted protein (528 aa)
   
 
  0.989
Phatr21557
Predicted protein (348 aa)
     
 
  0.986
Phatr12679
Predicted protein (290 aa)
     
 
  0.986
Phatr12144
Predicted protein (220 aa)
     
 
  0.985
Phatr16814
Predicted protein (662 aa)
     
 
  0.981
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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