STRINGSTRING
Phatr13384 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13384" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13384Predicted protein (594 aa)    
Predicted Functional Partners:
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
 
  0.989
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
     
 
  0.989
Phatr27905
Predicted protein (418 aa)
     
      0.944
Phatr21316
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (727 aa)
     
 
  0.894
Phatr33633
Predicted protein (818 aa)
     
 
  0.839
PHATR_2432
Predicted protein (305 aa)
       
 
  0.775
Phatr27762
Ubiquitin carrier protein (160 aa)
       
  0.675
Phatr9529
Predicted protein (348 aa)
     
 
  0.665
Phatr47369
Predicted protein (1496 aa)
     
 
  0.665
PHATR_2089
Predicted protein (449 aa)
     
 
  0.665
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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