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Phatr13395 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13395" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13395Predicted protein (161 aa)    
Predicted Functional Partners:
Phatr44961
Predicted protein (682 aa)
  0.962
Phatr10532
Predicted protein (167 aa)
 
 
  0.801
Phatr15625
Predicted protein (335 aa)
 
   
  0.753
Phatr9137
Predicted protein (114 aa)
   
 
  0.686
Phatr9342
Predicted protein (382 aa)
   
   
  0.554
hUba1
Ubiquitin-activating enzyme E1 (1050 aa)
   
   
  0.554
UBA1
Ubiquitin-activating enzyme E1, protein 1 (179 aa)
   
   
  0.554
SAE2
Sumo-activating enzyme 2 (643 aa)
   
   
  0.554
Phatr34373
Predicted protein; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfi [...] (418 aa)
   
   
  0.554
UBA3
Ubiquitin-activating enzyme E1, protein 3 (462 aa)
   
   
  0.554
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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