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STRINGSTRING
Phatr13395 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13395" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13395Predicted protein (161 aa)    
Predicted Functional Partners:
Phatr10532
Predicted protein (167 aa)
 
  0.970
Phatr54983
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
   
  0.939
Phatr44482
Predicted protein (600 aa)
         
  0.919
Phatr15625
Predicted protein (335 aa)
 
 
  0.766
Phatr9137
Predicted protein (114 aa)
 
   
  0.763
Phatr50796
Predicted protein (457 aa)
 
            0.693
Phatr44961
Predicted protein (682 aa)
 
          0.632
Phatr2182
Predicted protein (360 aa)
         
  0.600
Phatr34373
Adenylyltransferase and sulfurtransferase MOCS3 homolog; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards U [...] (418 aa)
 
   
  0.510
UBA1
Ubiquitin-activating enzyme E1, protein 1 (179 aa)
 
   
  0.432
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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