STRINGSTRING
Phatr13400 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13400" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13400Predicted protein (317 aa)    
Predicted Functional Partners:
hCDK7
Predicted protein (358 aa)
 
 
  0.806
Phatr21744
Predicted protein (149 aa)
       
  0.797
CBP
Calcium binding protein (132 aa)
       
0.690
CaM2
Calmodulin (154 aa)
       
0.687
CaM1
Calmoduline (149 aa)
       
0.681
CATR1
Caltractin (151 aa)
       
  0.654
CATR2
Caltractin (192 aa)
       
  0.654
hCDK1
Predicted protein (380 aa)
     
0.649
Phatr18128
Predicted protein (247 aa)
   
 
  0.624
Phatr47992
Predicted protein (432 aa)
       
  0.569
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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