STRINGSTRING
Phatr1341 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr1341" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr1341Predicted protein (540 aa)    
Predicted Functional Partners:
Phatr13088
Predicted protein (377 aa)
 
            0.648
SSD1
Succinate semialdehyde dehydrogenase (533 aa)
 
 
  0.645
SSDH
Succinate semialdehyde dehydrogenase (471 aa)
 
 
  0.633
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
 
 
  0.628
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
 
  0.628
Phatr20445
Predicted protein (524 aa)
 
 
  0.628
Phatr16540
Aldehyde dehydrogenase (432 aa)
   
 
  0.628
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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