STRINGSTRING
Phatr13520 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13520" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13520Predicted protein (127 aa)    
Predicted Functional Partners:
Phatr14572
Predicted protein (219 aa)
     
  0.973
Phatr47737
Predicted protein (361 aa)
       
  0.837
Phatr44632
Predicted protein (1440 aa)
       
  0.831
Phatr54743
Predicted protein (347 aa)
       
  0.820
Ran1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
 
    0.808
Ran2
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
 
    0.808
Phatr47943
Predicted protein (1167 aa)
       
  0.802
Phatr44298
Predicted protein (1736 aa)
       
  0.802
Phatr33304
Predicted protein (122 aa)
     
  0.801
Phatr49469
Predicted protein (522 aa)
     
    0.794
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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