STRINGSTRING
Phatr13537 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13537" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13537Predicted protein (290 aa)    
Predicted Functional Partners:
Phatr3351
Predicted protein (281 aa)
   
   
  0.516
Phatr19122
Predicted protein (322 aa)
   
   
  0.516
Phatr27735
Predicted protein (538 aa)
         
  0.468
Phatr19324
Predicted protein (554 aa)
              0.465
Phatr47992
Predicted protein (432 aa)
         
  0.443
Phatrdraft913
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)
     
  0.435
Phatr2271
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis (489 aa)
   
 
  0.428
Phatr17172
Predicted protein (551 aa)
   
 
  0.428
Phatr20893
Predicted protein (331 aa)
   
      0.418
Phatr14856
Predicted protein (151 aa)
   
      0.418
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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