STRINGSTRING
Phatr13617 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr13617" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13617Predicted protein (201 aa)    
Predicted Functional Partners:
Phatr46289
Predicted protein (338 aa)
     
  0.922
ACC2
Biotin carboxylase (2282 aa)
       
  0.898
Phatr47992
Predicted protein (432 aa)
     
  0.862
hCDK3
Predicted protein (295 aa)
   
 
  0.853
CDKA1
Predicted protein (290 aa)
   
 
  0.849
ACC1
Acetyl-coa carboxylase (2092 aa)
       
  0.793
MYT1
Predicted protein (1108 aa)
       
 
  0.784
PHATR_7088
Predicted protein (104 aa)
   
 
  0.767
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
       
  0.766
Phatr47178
Predicted protein (182 aa)
       
  0.765
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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