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HCL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"HCL1" - Hydroxymethylglutaryl-coenzyme A lyase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCL1Hydroxymethylglutaryl-coenzyme A lyase (321 aa)    
Predicted Functional Partners:
Phatr24772
Predicted protein (801 aa)
   
  0.966
Phatr16649
Predicted protein (461 aa)
         
  0.953
SKT1
Succinyl-coenzyme A-3-oxo-acid coenzyme a-transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (511 aa)
       
  0.935
Phatr45947
Predicted protein (403 aa)
   
 
  0.928
ACL
Atp-citrate synthase (1082 aa)
   
  0.915
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
   
 
  0.914
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
 
  0.914
Phatr23913
Acetyl-coa c-acetyltransferase (396 aa)
   
 
  0.914
Phatr26921
Beta chain succinyl-coa synthetase synthetase (443 aa)
       
  0.867
Phatr30145
Citrate synthase (471 aa)
   
 
  0.860
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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